PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00719.140
Common NameJCGZ_20493, LOC105645713
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 344aa    MW: 38217.1 Da    PI: 4.8124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00719.140genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20122172155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa+ +++a+ +l+g
  Jcr4S00719.140 122 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAARVYDNAAIQLRG 172
                     59********.**********72....45*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-33122179No hitNo description
PfamPF008476.7E-13123172IPR001471AP2/ERF domain
SMARTSM003801.3E-37123186IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21123180IPR016177DNA-binding domain
PROSITE profilePS5103224.039123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-30123180IPR001471AP2/ERF domain
PRINTSPR003671.8E-10124135IPR001471AP2/ERF domain
PRINTSPR003671.8E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDQNSLMSMN PVKFSEHRNH TKVLRPLSNP APEAKPPRVV RISVTDADAT DSSSDEEGDF  60
YRKQRVKKFV NEITIESCSG ESDGIWRSRS SRSSRRKSSS AKTGGGPARV LMVRGTTAGA  120
GKKFRGVRQR PWGKWAAEIR DPLRRVRLWL GTYDTAEEAA RVYDNAAIQL RGPDALTNFT  180
TPPAKCSPPT PTTKPAVSSG YNSGEESHNN NRVCSPTSVL RFPSSTSSNE EAESQSVLSS  240
KEVQEFGNGA REIKEESCVS ENLSNFSEYS SIDTLFSNDI FDFQNSISDI FQETSMEDGF  300
LKDDFGEMFT DCIRDLDFGF TNWNVDDDFQ DIGDLFGSDP LIAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-19121179362ATERF1
2gcc_A2e-19121179362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086774.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A067JN860.0A0A067JN86_JATCU; Uncharacterized protein
STRINGPOPTR_0001s10300.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-61cytokinin response factor 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]